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Allen Institute

Public charity · Grantmaker Seattle, WA EIN: 91-2155317 Website

The Allen Institute is a public charity based in Seattle, Washington, formed in 2003. It conducts large-scale bioscience research and makes grants for research, with a commitment to sharing scientific knowledge, data, models, tools, and reagents openly.

Allen Institute at a glance

In short: Allen Institute gave $19.2M across 31 grants in 2024 (avg $618K), top state Massachusetts. 19% of 2024 grantees were new. Source: 2024 IRS Form 990.

Annual giving (2024)
$19,155,275
+45.6% vs 2023
Grants made (2024)
31
+14.8% vs 2023
Average grant
$617,912
+26.8% vs 2023
Median grant
$137,464
Total assets
$367,120,032
+4.5% vs 2023
New grantees (estimate)
19% first-time grantees (6 of 31, 2024)
Primary geography
Massachusetts (25% of itemized 2024 grant dollars)
Latest 990 filing
Form 990, 2024 View filing

Data from IRS Form 990, 2024; updated September 2026. New grantees are estimated by matching recipient names across years (methodology).

How to apply to Allen Institute

Contact

Mailing address: 615 Westlake Avenue North, Seattle, WA 98109
Phone: (206) 548-7000
Website: https://alleninstitute.org

Application details from Grantable's research on the foundation's public materials; confirm on its website before applying.

Who Allen Institute funds

How this funder distributes its grants

Top Recipients

Top 10 recipients in 2024

University of Washington: $3.5MUniversity of Washington$3.5MThe Trustees of Princeton University: $3.4MThe Trustees of PrincetonUniversity$3.4MMassachusetts Institute of Technology: $2.5MMassachusetts Institute ofTechnology$2.5MIcahn School of Medicine at Mount Sinai: $1.9MIcahn School of Medicine atMount Sinai$1.9MZetta Ai LLC: $1.1MZetta Ai LLC$1.1MMassachusetts General Hospital: $943KMassachusetts General Hospital$943KRockefeller University: $815KRockefeller University$815KThe John Hopkins University: $659KThe John Hopkins University$659KBoston University: $589KBoston University$589KWashington University in St Louis: $581KWashington University in StLouis$581K

The largest 2024 recipient was University of Washington ($3.5M). Together the top 10 received $16.0M.

Grant Size Distribution

107 grants across all recorded years

17<$50K18$50–100K20$100–250K19$250–500K22$500K–1M11$1–5M$5M+

The most common grant size was in the $500K–1M range: 22 grants of 107 (21%).

Geographic Focus

Where this funder awards grants

In 2024, the largest shares of grant dollars went to recipients in Massachusetts (25%), New York (21%), Washington (19%), New Jersey (18%), and Illinois (5%).

Grant Distribution by State

15states

Share of 2024 grant dollars across all 31 itemized grants.

Cities

CambridgeLa JollaNew YorkSeattleBostonBerkeleyHoustonOaklandPhiladelphiaChicagoLos AngelesMinneapolisOmahaPasedenaPrincetonSaint LouisWatertownBaltimoreBirminghamPasadena

Is Allen Institute open to new grantees?

19%

first-time grantees, 2024

In 2024, 6 of 31 grantees (19%) were first-time recipients. First grants averaged $114K; repeat grants $739K. How we count

Medians: $25K first-time, $428K repeat.

  • 81% of 2024 grantees were also funded in 2023. Method
  • Giving grew 187% from 2021 to 2024. Method

Estimate from itemized grant lists in IRS Form 990 filings (2020–2024). Recipient names are matched across years, so a renamed or misspelled grantee can look new; grants to individuals are left out. Methodology.

Giving History

Giving Over Time

Total grant dollars and number of grants per year

$0$5M$10M$15M$20M11 grants2020 16 grants2021 22 grants2022 27 grants2023 31 grants2024

From 2020 to 2024, annual grant giving ranged from $5.1M (2020) to $19.2M (2024). In 2024 it made 31 grants totaling $19.2M.

Grants by year

Grant recipients and amounts by year

RecipientPurposeAmount
University of Washington Seattle, WAResearch$3,459,548
The Trustees of Princeton University Princeton, NJResearch$3,388,837
Massachusetts Institute of Technology Cambridge, MAResearch$2,518,196
Icahn School of Medicine at Mount Sinai New York, NYResearch$1,939,391
Zetta Ai LLC Sherrell, NYResearch$1,106,162
Massachusetts General Hospital Boston, MAResearch$942,942
Rockefeller University Birmingham, ALResearch$814,693
The John Hopkins University Baltimore, MAResearch$658,856
Boston University Boston, MAResearch$589,446
Washington University in St Louis Saint Louis, MOResearch$581,098
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Financial History

Multi-year comparison from IRS filings

Figures from IRS filings, by filing year
Filing yearTotal AssetsRevenueExpensesGrants paidGrantsNet Investment Income
2024$367,120,032$272,058,206$270,683,072$19,155,27531$6,033,321
2023$351,360,685$240,418,148$220,607,045$13,159,64627$4,319,610
2022$317,650,465$184,245,221$176,998,648$7,051,70822$1,906,826
2021$190,069,466$188,379,162$153,300,344$6,663,90616$1,806,704
2020$154,207,368$66,144,034$133,772,178$5,091,72411$-1,022,626

Research compiled by Grantable AI from public sources. Last updated September 2026.

Mission & Focus Areas

The Institute’s mission is to unlock the complexities of bioscience and advance knowledge to improve human health. It describes its approach as open, multi-scale, and team-oriented, with an emphasis on foundational research, developing standards and models, and cultivating ideas with broad impact on science.

Its research programs include mapping brain cells and circuits, studying how cells form tissues, investigating neural activity and behavior, building reference resources for the healthy human immune system, and engineering cells to record their histories. The Institute says it shares the data, tools, and knowledge generated by its large-scale projects with the global scientific community.

The 2024 grants listed include universities, medical schools, hospitals, and a research-support organization. Grantees describe their own missions in varied ways: Princeton University says it pursues research, education, and the discovery and transmission of knowledge; MIT says it advances knowledge and educates students; and Icahn School of Medicine at Mount Sinai says it advances science, medicine, and health care. Addgene describes its work as archiving and distributing plasmids connected to published research.

Grantmaking

In filing year 2024, the Institute reported 31 grants totaling $19,155,275. Grant amounts ranged from $3,015 to $3,459,548, with a median of $137,464. The largest listed grants were for research:

The Institute’s “Ask Anything, Change Everything” campaign invited ideas about what researchers should be able to measure to advance bioscience. It said it would identify research teams to receive up to $10 million in total funding to address selected questions; submissions are now closed.

Leadership & Key People

Leadership team and compensation from IRS filings

The 2024 filing lists these directors: Jo Lynn Allen, Margaret Anderson, Joanne Berger-Sweeney, Phyllis Campbell, Alta Charo, Thomas Daniel, Carla Dewberry, Stephen Hall, Allan Jones, and Michael Stryker.

Allen Institute is led by Rui Costa, President since 2024 (on filings since 2023); 10 of 21 officers listed in 2024 are compensated.

Officers on the 2024 filing

  • Rui Costa

    President

    President & CEO → President, 2024

    On filings since 2023

    40 hrs/week

    $1.2M (2023) → $1.2M (2024)

  • Hongkui Zeng

    Executive Vice President & Director Brain Science

    On filings since 2023

    40 hrs/week

    $575K (2023) → $599K (2024)

  • Karel Svoboda

    Executive Vice President & Director Neural Dynamics

    On filings since 2023

    40 hrs/week

    $529K (2023) → $556K (2024)

  • Kathryn Richmond

    Executive Vice President & Director Frontiers

    On filings since 2023

    40 hrs/week

    $489K (2023) → $509K (2024)

  • Michael Stryker

    Director

    On filings since 2023

    2 hrs/week

    $4K (2023) → $0 (2024)

  • Ananda Goldrath

    Executive Vice President & Director Allen I

    New on the 2024 filing

    40 hrs/week

    $599K (2024)

  • Ruwanthi Niranjala Gunawardane

    Executive Vice President & Director Cell Science

    New on the 2024 filing

    40 hrs/week

    $489K (2024)

  • Allan Jones

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Alta Charo

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Carla Dewberry

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Jo Lynn Allen

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Joanne Berger-Sweeney

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Margaret Anderson

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Phyllis Campbell

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Stephen Hall

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Thomas Daniel

    Director

    On filings since 2023

    2 hrs/week

    No compensation reported

  • Aviv Regev

    Director

    New on the 2024 filing

    2 hrs/week

    No compensation reported

  • Christopher Beaudoin

    Vice President & COO

    On filings since 2023

    40 hrs/week

    $426K (2023) → $555K (2024)

  • Margaret McClellan

    Vice President & Secretary

    On filings since 2023

    40 hrs/week

    $540K (2023) → $540K (2024)

  • Marjorie Thomas

    Vice President, Treasurer & CFO

    On filings since 2023

    40 hrs/week

    $566K (2023) → $598K (2024)

  • Andrew Hickl

    Chief Technology Officer

    New on the 2024 filing

    40 hrs/week

    $558K (2024)

Former officers (33)
  • Former: Christof Koch (2023) — Meritorious Investigator
  • Former: Petra Smith (2023) — Executive Director, People & Culture
  • Former: Robert Reid (2023) — Senior Investigator
  • Former: Allen Jo Lynn (2020–2022) — Director
  • Former: Anderson Margaret (2020–2022) — Director
  • Former: Brown Nathaniel (2020–2022) — Director
  • Former: Bumol Thomas (2020–2022) — Executive Vice President & Director Immunology
  • Former: Campbell Phyllis (2020–2022) — Director
  • Former: Daniel Thomas (2020–2022) — Director
  • Former: Hall Stephen (2020–2022) — Director
  • Former: Israel Allen D. (2020–2022) — Director
  • Former: Koch Christof (2020–2022) — Chief Scientist
  • Former: Locke Gary (2020–2022) — Director
  • Former: Reid Robert C. (2020–2022) — Senior Investigator
  • Former: Stryker Michael (2020–2022) — Director
  • Former: Thomas Marjorie (2020–2022) — Vice President, Treasurer & CFO
  • Former: Zeng Hongkui (2020–2022) — Executive Vice President & Director Brain Science
  • Former: Charo Alto (2021–2022) — Director
  • Former: Dewberry Carla (2021–2022) — Director
  • Former: McClellan Margaret (2021–2022) — Vice President & Secretary
  • Former: Richmond Kathryn (2021–2022) — Executive Vice President & Director Frontiers
  • Former: Beaudoin Christopher (2022) — Vice President & COO
  • Former: Costa Rui (2022) — President & CEO
  • Former: Jones Allan (2022) — Director & President
  • Former: Svoboda Karel (2022) — Executive Vice President & Director Neural Dynamics
  • Former: Alivisatos Paul (2020–2021) — Director
  • Former: Hackett Lauren (2020–2021) — Vice President
  • Former: Jones Allan R. (2020–2021) — President
  • Former: Larson Maja D. (2020–2021) — Vice President & Secretary
  • Former: Peterson Todd (2020–2021) — Vice President
  • Former: Phillips John W. (2020–2021) — Executive Director, Strategy & Evaluation
  • Former: Horwitz Alan Fredrick (2020) — Executive Director & Cell Science
  • Former: Wohnoutka Paul (2020) — Former Senior Director of Operations

Data from IRS Form 990 filings, 2020–2024. "On filings since" is the earliest filing we hold that lists the person; hours are average hours per week as reported.

Compensation Overview

From 2024 IRS filing

RUI Costa — President: $1.2MRUI CostaPresident$1.2MAnanda Goldrath — Executive VP, DIR. Allen I: $599KAnanda GoldrathExecutive VP, DIR. Allen I$599KHongkui Zeng — Executive VP, DIR. Brain Science: $599KHongkui ZengExecutive VP, DIR. Brain Science$599KMarjorie Thomas — VP, Treasurer, CFO: $598KMarjorie ThomasVP, Treasurer, CFO$598KAndrew Hickl — Chief Technology Officer: $558KAndrew HicklChief Technology Officer$558KKarel Svoboda — Executive VP, DIR. Neural Dynamics: $556KKarel SvobodaExecutive VP, DIR. Neural…$556KChristopher Beaudoin — Vice President, COO: $555KChristopher BeaudoinVice President, COO$555KMargaret McClellan — Vice President, Secretary: $540KMargaret McClellanVice President, Secretary$540KKathryn Richmond — Executive VP, DIR. Frontiers: $509KKathryn RichmondExecutive VP, DIR. Frontiers$509KRuwanthi Niranjala Gunawardane — Executive VP, DIR. Cell Science: $489KRuwanthi Niranjala…Executive VP, DIR. Cell Science$489K

The highest reported compensation on the 2024 filing was $1.2M, to RUI Costa (President). 10 officers or directors reported compensation on that filing.

Frequently asked questions about Allen Institute

How much does Allen Institute give each year?

Allen Institute gave $19.2M across 31 grants in 2024, according to its 2024 IRS Form 990. In 2023 it gave $13.2M across 27 grants.

What is Allen Institute's typical grant size?

Allen Institute's median grant in 2024 was $137,464, and its average grant was $617,912, across 31 grants on its 2024 IRS Form 990. Organizations receiving their first grant from Allen Institute that year got $114K on average.

Where does Allen Institute give grants?

Allen Institute's top state is Massachusetts, with 25% of the grant dollars itemized on its 2024 IRS Form 990. The next largest states were New York (21%) and Washington (19%). The most frequent recipient cities were New York, NY (3 grants), Seattle, WA (2 grants), Boston, MA (2 grants) and Chicago, IL (2 grants).

Does Allen Institute give general operating support?

Not in 2024: none of the 31 grants with a stated purpose on Allen Institute's 2024 IRS Form 990 were described as general or operating support. Recurring purposes include "Research" (31 grants).

Who are Allen Institute's largest grantees?

Allen Institute's largest 2024 grantees include University of Washington ($3,459,548), The Trustees of Princeton University ($3,388,837) and Massachusetts Institute of Technology ($2,518,196), according to its 2024 IRS Form 990. Together they received 49% of its itemized 2024 grant dollars.

How large is Allen Institute?

Allen Institute reported $367.1M in total assets on its 2024 IRS Form 990. Its revenue that year was $272.1M.

What does Allen Institute fund?

The Institute’s mission is to unlock the complexities of bioscience and advance knowledge to improve human health. See mission & focus areas ↑

How do I apply for a grant from Allen Institute?

Allen Institute has no public application process in the sources Grantable reviewed. Check alleninstitute.org for current guidelines, or contact the foundation directly before submitting a request.

What is Allen Institute's EIN?

Allen Institute's EIN (Employer Identification Number) is 91-2155317. IRS Form 990 filing data is available on this page for 2020–2024.

Data last updated September 2026. Sourced from IRS Form 990 filings. Research dossier generated September 2026.

Data update history

(6)

When this profile's IRS filing data changed on Grantable

  1. Updated Form 990 for fiscal year 2020 (received by the IRS November 11, 2021)
  2. Updated Form 990 for fiscal year 2021 (received by the IRS November 3, 2022)
  3. Updated Form 990 for fiscal year 2022 (received by the IRS November 6, 2023)
  4. Updated Form 990 for fiscal year 2023 (received by the IRS November 12, 2024)
  5. Updated Form 990 for fiscal year 2024 (received by the IRS September 15, 2025)
  6. IRS filings on file for fiscal years 2020–2024

Explore Open Grants

Browse active grant opportunities in Allen Institute's focus areas in our free grants database

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Cite this profile

Grantable. (2026). Allen Institute funder profile. GrantGraph. Retrieved October 24, 2026, from https://grantable.co/funders/allen-institute-morg_aa9447fdb87d410792c48659b17c50e1

BibTeX
@misc{grantable_912155317_2026,
  author       = {{Grantable}},
  title        = {{Allen Institute funder profile}},
  howpublished = {GrantGraph},
  year         = {2026},
  url          = {https://grantable.co/funders/allen-institute-morg_aa9447fdb87d410792c48659b17c50e1},
  note         = {Accessed 2026-10-24. Data licensed CC BY 4.0}
}

The figures on this page are open data under CC BY 4.0: reuse them with credit to Grantable and a link. Download the data.

Figures come from Allen Institute's IRS filings (methodology). AI-written summaries, news items and logos are not covered by the open licence. Spot an error? Email hello@grantable.co.

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